ntEdit: scalable genome sequence polishing
نویسندگان
چکیده
منابع مشابه
The Genome Sequence DataBase
The Genome Sequence DataBase (GSDB) is a database of publicly available nucleotide sequences and their associated biological and bibliographic information. Several notable changes have occurred in the past year: GSDB stopped accepting data submissions from researchers; ownership of data submitted to GSDB was transferred to GenBank; sequence analysis capabilities were expanded to include Smith-W...
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With the rapid development of sequencing technologies towards higher throughput and lower cost, sequence data are generated at an unprecedentedly explosive rate. To provide an efficient and easy-to-use platform for managing huge sequence data, here we present Genome Sequence Archive (GSA; http://bigd.big.ac.cn/gsa or http://gsa.big.ac.cn), a data repository for archiving raw sequence data. In c...
متن کاملGenome Sequence Analysis
The human genome has approximately 3.5 billion base pairs (bp) and is an excellent example for the analysis of eukaryotic genomes. The goal of genome research is to sequence each one of these base pairs so that all the genes and regulatory regions in the genome can be located. This information can then be used to facilitate discoveries in the basic and clinical sciences. Thus, the aim of most l...
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A hardware coprocessor for the rapid calculation of bioinformatic sequence alignments is presented. The coprocessor uses a globally-asynchronous locally-synchronous (GALS) design style which makes the coprocessor much easier to scale as CMOS feature sizes decrease. The coprocessor is intended to be implemented on a single integrated circuit along with a simple 32-bit RISC processor and memory s...
متن کاملScalable Hierarchical Multitask Learning in Sequence Biology
Multitask learning methods investigate the challenge of combining information from several related problem domains. For a large family of multitask problems, relationships between tasks can be described by a hierarchical structure. This is particularly the case for many problems in Computational Biology, where different tasks correspond to different organisms, whose relationship to each other i...
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ژورنال
عنوان ژورنال: Bioinformatics
سال: 2019
ISSN: 1367-4803,1460-2059
DOI: 10.1093/bioinformatics/btz400